Refquery Get cluster or sequence info from prepareref output Get list of available species from PubMLST Pubmlstget Download species from PubMLST and make db Prepareref Prepare reference data for input to "run" Micplot Make violin/dot plots using MIC data h, -help show this help message and exitĪln2meta Converts multi-aln fasta and SNPs to metadataĮxpandflag Expands flag column of report file Get reference data, for instance from CARD. ARIBA reports which of the reference sequences were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference sequences. The input is a FASTA file of reference sequences (can be a mix of genes and noncoding sequences) and paired sequencing reads. PLEASE NOTE: we currently do not have the resources to provide support for Ariba - see the Feedback/Issues section.ĪRIBA is a tool that identifies antibiotic resistance genes by running local assemblies. ARIBA Antimicrobial Resistance Identification By Assembly View on GitHub ARIBAĪntimicrobial Resistance Identification By Assemblyįor how to use ARIBA, please see the ARIBA wiki page. With the new CoP, for the 2022 Early Adopter Programme, and for 2023, there will be no differentiation levels.ARIBA | ariba Skip to the content. Note on levels: Not applicable refers to the period when the Communication on Progress (CoP) did not require differentiation levels. Note: Responsibility for the content of participants' public communication related to the Ten Principles of the UN Global Compact and their implementation lies with participants themselves and not with the UN Global Compact. Communication on Progress (SAP Integrated Report 2017)
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